PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AS_FDF16F4EA.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bZIP
Protein Properties Length: 174aa    MW: 18258.6 Da    PI: 8.5465
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AS_FDF16F4EA.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1346.5e-113779446
                           XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                 bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46
                            +r++r+ +NRe+ArrsR RK+  ++ L+  ++ L  eN   +
  Traes_6AS_FDF16F4EA.1 37 QRRAKRMLSNRESARRSRMRKQRHLDDLAAQAAHLRRENAHVA 79
                           689************************************8766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.4E-143498IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.6453699IPR004827Basic-leucine zipper domain
PfamPF001701.1E-83778IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1708.4E-938110No hitNo description
SuperFamilySSF579595.63E-103883No hitNo description
CDDcd147025.57E-153987No hitNo description
PROSITE patternPS0003604156IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MASSSGSGST GSLSTAAAMA MAAASGTEEE MRALMEQRRA KRMLSNRESA RRSRMRKQRH  60
LDDLAAQAAH LRRENAHVAA ALGLTARGLQ AVDAENAVLR TQAAELAARL HSLNDIIACM  120
SASNNTAAAV ALTVAAAATA TTTDPFLGGF DGASLDDYLF RSSPEMFMFP ALQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15057RRSRMRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00239DAPTransfer from AT1G75390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0673561e-114BT067356.2 Zea mays full-length cDNA clone ZM_BFc0022C11 mRNA, complete cds.
GenBankBT0853011e-114BT085301.2 Zea mays full-length cDNA clone ZM_BFb0368K21 mRNA, complete cds.
GenBankBT0853531e-114BT085353.2 Zea mays full-length cDNA clone ZM_BFc0002B07 mRNA, complete cds.
GenBankHQ8587961e-114HQ858796.1 Zea mays clone UT1860 bZIP transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689573.11e-62PREDICTED: ocs element-binding factor 1-like
TrEMBLW5GHH41e-119W5GHH4_WHEAT; Uncharacterized protein
STRINGMLOC_63436.16e-81(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44593367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34590.12e-21G-box binding factor 6
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]